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Branch: master
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oscar-test-d...
K-Meech fd5ad63c66 Merge branch 'hc/specify-offspring-sex-stats' of neuroinformatics/oscar-test-data into master 1 hete
.gitignore 8c360ad2c0 resolve conflict by adding git ignore 2 hónapja
README.md d2987e9fd6 add a brief readme outlining test data types 3 hónapja
converted-scheme-number.csv 9cfe473389 add scheme number table 1 hónapja
converted-scheme-proportion.csv 27682ad143 add scheme proportion table 1 hónapja
converted-scheme-summary.csv 2b7729bc59 update table name with - 1 hónapja
converted-surplus-per-genotype-sex-split.csv 391115b792 seperating sex split surplus data 2 hete
converted-surplus-per-genotype.csv 73d1c336db add converted surplus per genotype df 1 hónapja
converted-total-number.csv e533e2c5e4 add total number table 1 hónapja
pyrat-api-line-mutations-response.json a51ac9e2d9 switch mutation order so we can check alphabetical sorting 2 hónapja
pyrat-api-lines-response-1.json 7e0b7d8963 add mock responses for api lines call 2 hónapja
pyrat-api-lines-response-2.json 7e0b7d8963 add mock responses for api lines call 2 hónapja
pyrat-api-lines.csv 7e0b7d8963 add mock responses for api lines call 2 hónapja
pyrat-api-multiple-response-and-parents-both-parents.json 3b7eed8428 updating files to join parents 2 hónapja
pyrat-api-multiple-response-and-parents-offspring.json bf84b11746 add offspring sex 4 hete
pyrat-api-multiple-response-multiple-parents.csv bf84b11746 add offspring sex 4 hete
pyrat-api-multiple-responses-offspring.json bf84b11746 add offspring sex 4 hete
pyrat-api-multiple-responses-parents.json 68e393951d joined parents into one file 2 hónapja
pyrat-api-multiple-responses.csv bf84b11746 add offspring sex 4 hete
pyrat-api-no-parents-mutations-offspring.json bf84b11746 add offspring sex 4 hete
pyrat-api-no-parents-mutations.csv bf84b11746 add offspring sex 4 hete
pyrat-api-single-parent-mother.json 88dad25fe1 add example where all individuals are missing one parent 5 hónapja
pyrat-api-single-parent-offspring.json bf84b11746 add offspring sex 4 hete
pyrat-api-single-parent.csv bf84b11746 add offspring sex 4 hete
pyrat-api-single-response-offspring.json bf84b11746 add offspring sex 4 hete
pyrat-api-single-response-parents.json 3b7eed8428 updating files to join parents 2 hónapja
pyrat-api-single-response.csv bf84b11746 add offspring sex 4 hete
pyrat-data-1-mutation.csv f76efba72a add back this file, deleted for test 3 hete
pyrat-data-2-mutations.csv bf84b11746 add offspring sex 4 hete
pyrat-data-3-mutations.csv bf84b11746 add offspring sex 4 hete
pyrat-data-all-forbidden.csv 1a2b747e96 add offspring sex column 3 hete
pyrat-data-forbidden-genotypes.csv b720d4cad7 merged with master 3 hete
pyrat-data-forbidden-parents.csv bf84b11746 add offspring sex 4 hete
pyrat-data-forbidden-schemes.csv bf84b11746 add offspring sex 4 hete
pyrat-data-multiple-parents-1-mutation.csv bf84b11746 add offspring sex 4 hete
pyrat-data-multiple-parents-2-mutations.csv bf84b11746 add offspring sex 4 hete
pyrat-data-multiple-parents-3-mutations.csv bf84b11746 add offspring sex 4 hete
standardised-data-1-mutation.csv bf84b11746 add offspring sex 4 hete
standardised-data-2-mutations.csv bf84b11746 add offspring sex 4 hete
standardised-data-3-mutations.csv bf84b11746 add offspring sex 4 hete
standardised-data-forbidden-genotypes-minus-wt.csv 5dd91625f8 added sex_split optionto test-data 4 hete
standardised-data-forbidden-genotypes-plus-wt.csv 5dd91625f8 added sex_split optionto test-data 4 hete
standardised-data-forbidden-genotypes.csv 5dd91625f8 added sex_split optionto test-data 4 hete
standardised-data-forbidden-parents.csv bf84b11746 add offspring sex 4 hete
standardised-data-forbidden-schemes.csv bf84b11746 add offspring sex 4 hete
standardised-data-multiple-parents-1-mutation.csv bf84b11746 add offspring sex 4 hete
standardised-data-multiple-parents-2-mutations.csv bf84b11746 add offspring sex 4 hete
standardised-data-multiple-parents-3-mutations.csv bf84b11746 add offspring sex 4 hete

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv