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oscar-test-d...
Henry Crosswell fd8f728af8 adding more edge cases to multi-parent 1 miesiąc temu
.gitignore 8c360ad2c0 resolve conflict by adding git ignore 2 miesięcy temu
README.md d2987e9fd6 add a brief readme outlining test data types 3 miesięcy temu
pyrat-api-line-mutations-response.json a51ac9e2d9 switch mutation order so we can check alphabetical sorting 2 miesięcy temu
pyrat-api-lines-response-1.json 7e0b7d8963 add mock responses for api lines call 2 miesięcy temu
pyrat-api-lines-response-2.json 7e0b7d8963 add mock responses for api lines call 2 miesięcy temu
pyrat-api-lines.csv 7e0b7d8963 add mock responses for api lines call 2 miesięcy temu
pyrat-api-multiple-response-and-parents-both-parents.json 3b7eed8428 updating files to join parents 2 miesięcy temu
pyrat-api-multiple-response-and-parents-offspring.json 6607045683 updated test data to include match asserts better 3 miesięcy temu
pyrat-api-multiple-response-multiple-parents.csv 9dc46d3c61 changed column names to fit new naming scheme 2 miesięcy temu
pyrat-api-multiple-responses-offspring.json 609d85dade fix typo in animalid 5 miesięcy temu
pyrat-api-multiple-responses-parents.json 68e393951d joined parents into one file 2 miesięcy temu
pyrat-api-multiple-responses.csv 6a833f2c20 removed err multiple parents 2 miesięcy temu
pyrat-api-no-parents-mutations-offspring.json c8bc4ed8b6 add example with no listed mutations or parents 5 miesięcy temu
pyrat-api-no-parents-mutations.csv 77e740541e update to include new column naming scheme - test batch 2 miesięcy temu
pyrat-api-single-parent-mother.json 6c1bf95ab1 rename a file for api changes 2 miesięcy temu
pyrat-api-single-parent-offspring.json 88dad25fe1 add example where all individuals are missing one parent 5 miesięcy temu
pyrat-api-single-parent.csv 77e740541e update to include new column naming scheme - test batch 2 miesięcy temu
pyrat-api-single-response-offspring.json 1acee0f65e add mock json responses for api requests 5 miesięcy temu
pyrat-api-single-response-parents.json 3b7eed8428 updating files to join parents 2 miesięcy temu
pyrat-api-single-response.csv 77e740541e update to include new column naming scheme - test batch 2 miesięcy temu
pyrat-data-1-mutation.csv e6c2b42f29 changed file name to fit naming convention 2 miesięcy temu
pyrat-data-2-mutations.csv e84a420e6a updated column names 2 miesięcy temu
pyrat-data-3-mutations.csv e84a420e6a updated column names 2 miesięcy temu
pyrat-data-forbidden-genotypes.csv d268da66bd merge with master 1 miesiąc temu
pyrat-data-forbidden-parents.csv ad0891b69b fixed test data 1 miesiąc temu
pyrat-data-forbidden-schemes.csv 0347b1d56f added no parent line to foribdden schemes 1 miesiąc temu
pyrat-data-multiple-parents-1-mutation.csv 1dd09328ec updated to add more edge cases 2 miesięcy temu
pyrat-data-multiple-parents-2-mutations.csv 7124b0dcf9 fix errors in data 2 miesięcy temu
pyrat-data-multiple-parents-3-mutations.csv cbe4272c77 fix errors in data 2 miesięcy temu
pyrat-data-wt-value.csv e20e915a39 change forbidden and add new test data files for user inpiuts 2 miesięcy temu
standardised-data-1-mutation.csv 12bffb64a0 merge upstream changes 1 miesiąc temu
standardised-data-2-mutations.csv 12bffb64a0 merge upstream changes 1 miesiąc temu
standardised-data-3-mutations.csv 12bffb64a0 merge upstream changes 1 miesiąc temu
standardised-data-forbidden-genotypes.csv 868563d576 merge with master 1 miesiąc temu
standardised-data-forbidden-parents.csv c3886dcd55 split mutation columns for remaining tables 1 miesiąc temu
standardised-data-forbidden-schemes.csv 12bffb64a0 merge upstream changes 1 miesiąc temu
standardised-data-multiple-parents-1-mutation.csv fd8f728af8 adding more edge cases to multi-parent 1 miesiąc temu
standardised-data-multiple-parents-2-mutations.csv fd8f728af8 adding more edge cases to multi-parent 1 miesiąc temu
standardised-data-multiple-parents-3-mutations.csv fd8f728af8 adding more edge cases to multi-parent 1 miesiąc temu
standardised-data-wt-value-minus-is-wt.csv e20e915a39 change forbidden and add new test data files for user inpiuts 2 miesięcy temu
standardised-data-wt-value-plus-is-wt.csv e20e915a39 change forbidden and add new test data files for user inpiuts 2 miesięcy temu

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv