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Henry Crosswell bf84b11746 add offspring sex il y a 1 mois
.gitignore 8c360ad2c0 resolve conflict by adding git ignore il y a 2 mois
README.md d2987e9fd6 add a brief readme outlining test data types il y a 3 mois
converted-scheme-number.csv 9cfe473389 add scheme number table il y a 1 mois
converted-scheme-proportion.csv 27682ad143 add scheme proportion table il y a 1 mois
converted-scheme-summary.csv 2b7729bc59 update table name with - il y a 1 mois
converted-surplus-per-genotype.csv 73d1c336db add converted surplus per genotype df il y a 1 mois
converted-total-number.csv e533e2c5e4 add total number table il y a 1 mois
pyrat-api-line-mutations-response.json a51ac9e2d9 switch mutation order so we can check alphabetical sorting il y a 2 mois
pyrat-api-lines-response-1.json 7e0b7d8963 add mock responses for api lines call il y a 2 mois
pyrat-api-lines-response-2.json 7e0b7d8963 add mock responses for api lines call il y a 2 mois
pyrat-api-lines.csv 7e0b7d8963 add mock responses for api lines call il y a 2 mois
pyrat-api-multiple-response-and-parents-both-parents.json 3b7eed8428 updating files to join parents il y a 2 mois
pyrat-api-multiple-response-and-parents-offspring.json bf84b11746 add offspring sex il y a 1 mois
pyrat-api-multiple-response-multiple-parents.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-api-multiple-responses-offspring.json bf84b11746 add offspring sex il y a 1 mois
pyrat-api-multiple-responses-parents.json 68e393951d joined parents into one file il y a 2 mois
pyrat-api-multiple-responses.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-api-no-parents-mutations-offspring.json bf84b11746 add offspring sex il y a 1 mois
pyrat-api-no-parents-mutations.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-api-single-parent-mother.json 88dad25fe1 add example where all individuals are missing one parent il y a 5 mois
pyrat-api-single-parent-offspring.json bf84b11746 add offspring sex il y a 1 mois
pyrat-api-single-parent.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-api-single-response-offspring.json bf84b11746 add offspring sex il y a 1 mois
pyrat-api-single-response-parents.json 3b7eed8428 updating files to join parents il y a 2 mois
pyrat-api-single-response.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-1-mutation.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-2-mutations.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-3-mutations.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-forbidden-genotypes.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-forbidden-parents.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-forbidden-schemes.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-multiple-parents-1-mutation.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-multiple-parents-2-mutations.csv bf84b11746 add offspring sex il y a 1 mois
pyrat-data-multiple-parents-3-mutations.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-1-mutation.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-2-mutations.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-3-mutations.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-forbidden-genotypes-minus-wt.csv 682951f21b changes to simplify and de-duplicate output il y a 1 mois
standardised-data-forbidden-genotypes-plus-wt.csv 682951f21b changes to simplify and de-duplicate output il y a 1 mois
standardised-data-forbidden-genotypes.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-forbidden-parents.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-forbidden-schemes.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-multiple-parents-1-mutation.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-multiple-parents-2-mutations.csv bf84b11746 add offspring sex il y a 1 mois
standardised-data-multiple-parents-3-mutations.csv bf84b11746 add offspring sex il y a 1 mois

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv