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Henry Crosswell 77e740541e update to include new column naming scheme - test batch 2 mesi fa
.gitignore fbe862109e added git ignore for ds store 3 mesi fa
README.md d2987e9fd6 add a brief readme outlining test data types 3 mesi fa
pyrat-api-multiple-response-and-parents-father.json 1944e945d8 new test_data featuring multiple parents 3 mesi fa
pyrat-api-multiple-response-and-parents-mother.json 1944e945d8 new test_data featuring multiple parents 3 mesi fa
pyrat-api-multiple-response-and-parents-offspring.json 6607045683 updated test data to include match asserts better 3 mesi fa
pyrat-api-multiple-response-multiple-parents.csv 9dc46d3c61 changed column names to fit new naming scheme 2 mesi fa
pyrat-api-multiple-responses-father.json 1acee0f65e add mock json responses for api requests 5 mesi fa
pyrat-api-multiple-responses-mother.json 1acee0f65e add mock json responses for api requests 5 mesi fa
pyrat-api-multiple-responses-offspring.json 609d85dade fix typo in animalid 5 mesi fa
pyrat-api-multiple-responses.csv 77e740541e update to include new column naming scheme - test batch 2 mesi fa
pyrat-api-no-parents-mutations-offspring.json c8bc4ed8b6 add example with no listed mutations or parents 5 mesi fa
pyrat-api-no-parents-mutations.csv 77e740541e update to include new column naming scheme - test batch 2 mesi fa
pyrat-api-single-parent-mother.json 88dad25fe1 add example where all individuals are missing one parent 5 mesi fa
pyrat-api-single-parent-offspring.json 88dad25fe1 add example where all individuals are missing one parent 5 mesi fa
pyrat-api-single-parent.csv 77e740541e update to include new column naming scheme - test batch 2 mesi fa
pyrat-api-single-response-father.json 1acee0f65e add mock json responses for api requests 5 mesi fa
pyrat-api-single-response-mother.json 1acee0f65e add mock json responses for api requests 5 mesi fa
pyrat-api-single-response-offspring.json 1acee0f65e add mock json responses for api requests 5 mesi fa
pyrat-api-single-response.csv 77e740541e update to include new column naming scheme - test batch 2 mesi fa
pyrat-data-2-mutations.csv e730a1c2d1 update ID 17 so there's a mix of offspring genotypes 3 mesi fa
pyrat-data-3-mutations.csv 1cd9858c9d remove impossible offspring genotype for ID-014 3 mesi fa
pyrat-data-forbidden-genotypes.csv eb86312260 reduce number of breeding schemes in ungenotyped example 5 mesi fa
pyrat-data-multiple-parents-1-mutation.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
pyrat-data-multiple-parents-2-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
pyrat-data-multiple-parents-3-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
pyrat-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data 6 mesi fa
standardised-data-2-mutations.csv e730a1c2d1 update ID 17 so there's a mix of offspring genotypes 3 mesi fa
standardised-data-3-mutations.csv 1cd9858c9d remove impossible offspring genotype for ID-014 3 mesi fa
standardised-data-forbidden-genotypes.csv eb86312260 reduce number of breeding schemes in ungenotyped example 5 mesi fa
standardised-data-multiple-parents-1-mutation.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
standardised-data-multiple-parents-2-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
standardised-data-multiple-parents-3-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output 3 mesi fa
standardised-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data 6 mesi fa

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv