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Henry Crosswell 6ce195b3c7 merging from main as 2 and 3 mutations were edited to work with changes il y a 3 mois
.gitignore 769b041e8d Added gitignore for DSstore il y a 3 mois
README.md d2987e9fd6 add a brief readme outlining test data types il y a 3 mois
pyrat-api-multiple-responses-father.json 1acee0f65e add mock json responses for api requests il y a 5 mois
pyrat-api-multiple-responses-mother.json 1acee0f65e add mock json responses for api requests il y a 5 mois
pyrat-api-multiple-responses-offspring.json 609d85dade fix typo in animalid il y a 5 mois
pyrat-api-multiple-responses.csv 59083a0179 add example where only one parent is missing il y a 5 mois
pyrat-api-no-parents-mutations-offspring.json c8bc4ed8b6 add example with no listed mutations or parents il y a 5 mois
pyrat-api-no-parents-mutations.csv c8bc4ed8b6 add example with no listed mutations or parents il y a 5 mois
pyrat-api-single-parent-mother.json 88dad25fe1 add example where all individuals are missing one parent il y a 5 mois
pyrat-api-single-parent-offspring.json 88dad25fe1 add example where all individuals are missing one parent il y a 5 mois
pyrat-api-single-parent.csv 88dad25fe1 add example where all individuals are missing one parent il y a 5 mois
pyrat-api-single-response-father.json 1acee0f65e add mock json responses for api requests il y a 5 mois
pyrat-api-single-response-mother.json 1acee0f65e add mock json responses for api requests il y a 5 mois
pyrat-api-single-response-offspring.json 1acee0f65e add mock json responses for api requests il y a 5 mois
pyrat-api-single-response.csv c0b8fa1daf fix typo in header column name il y a 5 mois
pyrat-data-2-mutations.csv e730a1c2d1 update ID 17 so there's a mix of offspring genotypes il y a 3 mois
pyrat-data-3-mutations.csv 1cd9858c9d remove impossible offspring genotype for ID-014 il y a 3 mois
pyrat-data-forbidden-genotypes.csv eb86312260 reduce number of breeding schemes in ungenotyped example il y a 5 mois
pyrat-data-forbidden-schemes.csv 128eedc090 fixed typo in forbidden il y a 3 mois
pyrat-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data il y a 6 mois
standardised-data-2-mutations.csv e730a1c2d1 update ID 17 so there's a mix of offspring genotypes il y a 3 mois
standardised-data-3-mutations.csv 1cd9858c9d remove impossible offspring genotype for ID-014 il y a 3 mois
standardised-data-forbidden-genotypes.csv eb86312260 reduce number of breeding schemes in ungenotyped example il y a 5 mois
standardised-data-forbidden-schemes.csv 128eedc090 fixed typo in forbidden il y a 3 mois
standardised-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data il y a 6 mois

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv