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ИН на ревизия: 6a833f2c20
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oscar-test-d...
Henry Crosswell 6a833f2c20 removed err multiple parents преди 2 месеца
.gitignore fbe862109e added git ignore for ds store преди 3 месеца
README.md d2987e9fd6 add a brief readme outlining test data types преди 3 месеца
pyrat-api-multiple-response-and-parents-father.json 1944e945d8 new test_data featuring multiple parents преди 3 месеца
pyrat-api-multiple-response-and-parents-mother.json 1944e945d8 new test_data featuring multiple parents преди 3 месеца
pyrat-api-multiple-response-and-parents-offspring.json 6607045683 updated test data to include match asserts better преди 3 месеца
pyrat-api-multiple-response-multiple-parents.csv 9dc46d3c61 changed column names to fit new naming scheme преди 2 месеца
pyrat-api-multiple-responses-father.json 1acee0f65e add mock json responses for api requests преди 5 месеца
pyrat-api-multiple-responses-mother.json 1acee0f65e add mock json responses for api requests преди 5 месеца
pyrat-api-multiple-responses-offspring.json 609d85dade fix typo in animalid преди 5 месеца
pyrat-api-multiple-responses.csv 6a833f2c20 removed err multiple parents преди 2 месеца
pyrat-api-no-parents-mutations-offspring.json c8bc4ed8b6 add example with no listed mutations or parents преди 5 месеца
pyrat-api-no-parents-mutations.csv 77e740541e update to include new column naming scheme - test batch преди 2 месеца
pyrat-api-single-parent-mother.json 88dad25fe1 add example where all individuals are missing one parent преди 5 месеца
pyrat-api-single-parent-offspring.json 88dad25fe1 add example where all individuals are missing one parent преди 5 месеца
pyrat-api-single-parent.csv 77e740541e update to include new column naming scheme - test batch преди 2 месеца
pyrat-api-single-response-father.json 1acee0f65e add mock json responses for api requests преди 5 месеца
pyrat-api-single-response-mother.json 1acee0f65e add mock json responses for api requests преди 5 месеца
pyrat-api-single-response-offspring.json 1acee0f65e add mock json responses for api requests преди 5 месеца
pyrat-api-single-response.csv 77e740541e update to include new column naming scheme - test batch преди 2 месеца
pyrat-data-2-mutations.csv 8c95c75a1b update to include new column naming scheme преди 2 месеца
pyrat-data-3-mutations.csv 8c95c75a1b update to include new column naming scheme преди 2 месеца
pyrat-data-forbidden-genotypes.csv 8c95c75a1b update to include new column naming scheme преди 2 месеца
pyrat-data-multiple-parents-1-mutation.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
pyrat-data-multiple-parents-2-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
pyrat-data-multiple-parents-3-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
pyrat-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data преди 6 месеца
standardised-data-2-mutations.csv e730a1c2d1 update ID 17 so there's a mix of offspring genotypes преди 3 месеца
standardised-data-3-mutations.csv 1cd9858c9d remove impossible offspring genotype for ID-014 преди 3 месеца
standardised-data-forbidden-genotypes.csv eb86312260 reduce number of breeding schemes in ungenotyped example преди 5 месеца
standardised-data-multiple-parents-1-mutation.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
standardised-data-multiple-parents-2-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
standardised-data-multiple-parents-3-mutations.csv 957b0ce245 added new test data for multiple parents standardisation output преди 3 месеца
standardised-data-single-mutation.csv 322cb3d778 update mother ids to be sequential in single mutation data преди 6 месеца

README.md

oscar-test-data

Test data for OSCaR breeding scheme calculator.

All test data is fake, but matches the structure and edge cases of real data from a PyRAT server.

Types of test data

  • *.json: JSON files of raw PyRAT api responses
  • pyrat-api-*.csv: Expected csv files output by get_pyrat_data
  • pyrat-data-*.csv: Input csv files to standardise_pyrat_csv
  • standardised-data-*.csv: Expected output csv files from standardise_pyrat_csv