reduced genotype column down to just one

standardised-data-2-mutations.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-003,Line-AB,02/01/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,het_hom,hom_het

standardised-data-3-mutations.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het
 ID-002,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het
 ID-003,Line-ABC,02/01/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het

standardised-data-forbidden-genotypes.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom
 ID-006,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom
 ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom

standardised-data-forbidden-parents.csv

@@ -1,2 +1,2 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_father_2,genotype_mother_1,genotype_mother_2
-ID-006,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,hom,hom,hom,het,het
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-006,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,hom,hom,het

standardised-data-forbidden-schemes.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-003,Line-AB,02/01/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,het_hom,hom_het

standardised-data-multiple-parents-1-mutation.csv

@@ -1,7 +1,7 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_father_2,genotype_mother_1,genotype_mother_2
-ID-001,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,hom,hom,hom,het,het
-ID-002,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,het,het,het,hom,hom
-ID-003,Line-A,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,1,Mut-A,het,hom,,het,het
-ID-006,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,wt,wt,wt,wt,wt
-ID-007,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,het,het,het,wt,wt
-ID-010,Line-A,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,1,Mut-A,hom,hom,,hom,hom
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,hom,hom,het
+ID-002,Line-A,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,1,Mut-A,het,het,hom
+ID-003,Line-A,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,1,Mut-A,het,hom,het
+ID-006,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,wt,wt,wt
+ID-007,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,het,het,wt
+ID-010,Line-A,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,1,Mut-A,hom,hom,hom

standardised-data-multiple-parents-2-mutations.csv

@@ -1,6 +1,6 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_father_2,genotype_mother_1,genotype_mother_2
-ID-001,Line-AB,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,2,Mut-A_Mut-B,het_het,wt_het,wt_het,het_wt,het_wt
-ID-002,Line-AB,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,2,Mut-A_Mut-B,hom_het,hom_wt,hom_wt,hom_het,hom_het
-ID-004,Line-AB,02/01/2026,ID-F3,ID-F4,ID-M3,,End of experiment,2,Mut-A_Mut-B,het_het,hom_wt,hom_wt,het_het,
-ID-007,Line-AB,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,2,Mut-A_Mut-B,het_wt,het_wt,het_wt,wt_wt,wt_wt
-ID-010,Line-AB,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,2,Mut-A_Mut-B,het_wt,het_het,,het_wt,het_wt
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-AB,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,2,Mut-A_Mut-B,het_het,wt_het,het_wt
+ID-002,Line-AB,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,2,Mut-A_Mut-B,hom_het,hom_wt,hom_het
+ID-004,Line-AB,02/01/2026,ID-F3,ID-F4,ID-M3,,End of experiment,2,Mut-A_Mut-B,het_het,hom_wt,
+ID-007,Line-AB,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,2,Mut-A_Mut-B,het_wt,het_wt,wt_wt
+ID-010,Line-AB,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,2,Mut-A_Mut-B,het_wt,het_het,het_wt

standardised-data-multiple-parents-3-mutations.csv

@@ -1,7 +1,7 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_father_2,genotype_mother_1,genotype_mother_2
-ID-001,Line-ABC,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,3,Mut-A_Mut-B_Mut-C,wt_wt_hom,wt_wt_het,wt_wt_het,het_het_het,het_het_het
-ID-002,Line-ABC,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,3,Mut-A_Mut-B_Mut-C,hom_wt_wt,het_het_het,het_het_het,hom_wt_het,hom_wt_het
-ID-003,Line-ABC,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,3,Mut-A_Mut-B_Mut-C,het_het_het,het_het_het,,wt_het_het,wt_het_het
-ID-004,Line-ABC,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,3,Mut-A_Mut-B_Mut-C,het_hom_het,het_hom_wt,,wt_het_hom,wt_het_hom
-ID-007,Line-ABC,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_wt,het_wt_wt,het_wt_wt,wt_wt_wt,wt_wt_wt
-ID-010,Line-ABC,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,het_wt_hom,,wt_wt_hom,wt_wt_hom
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_father_2,ID_mother_1,ID_mother_2,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-ABC,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,3,Mut-A_Mut-B_Mut-C,wt_wt_hom,wt_wt_het,het_het_het
+ID-002,Line-ABC,15/12/2025,ID-F1,ID-F2,ID-M1,ID-M2,End of experiment,3,Mut-A_Mut-B_Mut-C,hom_wt_wt,het_het_het,hom_wt_het
+ID-003,Line-ABC,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,3,Mut-A_Mut-B_Mut-C,het_het_het,het_het_het,wt_het_het
+ID-004,Line-ABC,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,3,Mut-A_Mut-B_Mut-C,het_hom_het,het_hom_wt,wt_het_hom
+ID-007,Line-ABC,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_wt,het_wt_wt,het_wt_wt
+ID-010,Line-ABC,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,het_wt_hom,wt_wt_hom

standardised-data-single-mutation.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,het,wt,het
 ID-002,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,wt,wt,het
 ID-003,Line-A,02/01/2026,ID-F1,ID-M1,End of experiment,1,Mut-A,het,wt,het