Merge branch 'hc/specify-offspring-sex-stats' of neuroinformatics/oscar-test-data into master

converted-surplus-per-genotype-sex-split.csv

@@ -0,0 +1,10 @@
+Genotype,Required N,Total N,Total N Surplus,Percent Surplus,Required Males,Total Males,Total Male Surplus,Percent Male Surplus,Required Females,Total Females,Total Female Surplus,Percent Female Surplus
+het_het,290.0,380.69,90.69,23.82,150.0,190.35,40.35,21.2,140.0,190.35,50.35,26.45
+het_hom,18.0,18.82,0.82,4.34,,,,,,,,
+hom_het,25.0,50.66,25.66,50.65,10.0,25.33,15.33,60.52,15.0,25.33,10.33,40.78
+hom_hom,1.0,1.45,0.45,30.92,,,,,,,,
+het_wt,23.0,23.16,0.16,0.69,,,,,,,,
+hom_wt,20.0,20.26,0.26,1.31,,,,,,,,
+wt_het,42.0,49.22,7.22,14.66,20.0,24.61,4.61,18.72,22.0,24.61,2.61,10.6
+wt_wt,4.0,4.34,0.34,7.89,,,,,,,,
+wt_hom,7.0,7.24,0.24,3.28,,,,,,,,

pyrat-data-forbidden-genotypes.csv

@@ -5,9 +5,9 @@ ID-003,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,Tg,Mut-B,Tg,,,Mu
 ID-004,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,-/-,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,
 ID-005,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,het,,,Mut-A,+/+,Mut-B,+/+,,,Mut-A,-/-,Mut-B,-/-,,
 ID-006,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/ko,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,ko/ko,,
-ID-007,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,Mut-A,ki/ki,Mut-B,het,,,Mut-A,wt,Mut-B,ki/ki,,
+ID-007,,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,Mut-A,ki/ki,Mut-B,het,,,Mut-A,wt,Mut-B,ki/ki,,
 ID-008,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/-,Mut-B,ko/+,,,Mut-A,ko/-,Mut-B,het,,,Mut-A,-/ko,Mut-B,+/ko,,
-ID-009,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,-/+,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
+ID-009,,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,-/+,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
 ID-010,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/+,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,+/+,,
 ID-011,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/-,Mut-B,,,,Mut-A,+/-,Mut-B,het,,,Mut-A,het,Mut-B,het,,
 ID-012,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,,Mut-B,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,

standardised-data-forbidden-genotypes-minus-wt.csv

@@ -4,9 +4,9 @@ ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,h
 ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,het_het,het_het
 ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_hom,wt_wt
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_hom
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom

standardised-data-forbidden-genotypes-plus-wt.csv

@@ -4,9 +4,9 @@ ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,w
 ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,het_het,het_het
 ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,wt_wt,hom_hom
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_wt
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom

standardised-data-forbidden-genotypes.csv

@@ -1,9 +1,9 @@
 ID_offspring,line_name,offspring_sex,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
 ID-013,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt