reduce number of breeding schemes in ungenotyped example

pyrat-data-forbidden-genotypes.csv

@@ -1,5 +1,5 @@
 ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1,Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
-ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,hom,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,hom,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
 ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+,Mut-B,-,,,Mut-A,+,Mut-B,-,,,Mut-A,+,Mut-B,-,,
 ID-003,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,Tg,Mut-B,Tg,,,Mut-A,T,Mut-B,-,,,Mut-A,T,Mut-B,-,,
 ID-004,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+,Mut-B,-,,,Mut-A,het,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,
@@ -9,7 +9,7 @@ ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,
 ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/+,,,Mut-A,ko/-,Mut-B,het,,,Mut-A,-/ko,Mut-B,+/ko,,
 ID-009,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
 ID-010,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/ko,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,+,,
-ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,,,,Mut-A,het,Mut-B,het,,,Mut-A,wt,Mut-B,het,,
-ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,,Mut-B,,,,Mut-A,het,Mut-B,het,,,Mut-A,wt,Mut-B,het,,
+ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
+ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,,Mut-B,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
 ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,,,,,,,,,,,,
-ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,Mut-A,het,Mut-B,het,,,Mut-A,hom,Mut-B,het,,
+ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,

standardised-data-forbidden-genotypes.csv

@@ -1,10 +1,10 @@
 ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
-ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,het_hom
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom
 ID-006,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom
 ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_het,het_het,het_het
 ID-009,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_het,het_het,het_het
-ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_wt,het_het,wt_het
-ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,het_het,wt_het
+ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_wt,hom_het,wt_hom
+ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,hom_het,wt_hom
 ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,wt_wt,wt_wt
-ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,het_het,hom_het
+ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,hom_het,wt_hom