updated column names

pyrat-data-2-mutations.csv

@@ -1,4 +1,4 @@
-ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1,Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
+ID,Line / Strain (Name),DOB,Father 1,Mother 1,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father 1: Mutation 1,Father 1: Grade 1,Father 1: Mutation 2,Father 1: Grade 2,Father 1: Mutation 3,Father 1: Grade 3,Mother 1: Mutation 1,Mother 1: Grade 1,Mother 1: Mutation 2,Mother 1: Grade 2,Mother 1: Mutation 3,Mother 1: Grade 3
 ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,hom,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,,Mut-A,hom,Mut-B,het,,
 ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,hom,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,,Mut-A,hom,Mut-B,het,,
 ID-003,Line-AB,02/01/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,,Mut-A,hom,Mut-B,het,,

pyrat-data-3-mutations.csv

@@ -1,4 +1,4 @@
-ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1,Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
+ID,Line / Strain (Name),DOB,Father 1,Mother 1,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father 1: Mutation 1,Father 1: Grade 1,Father 1: Mutation 2,Father 1: Grade 2,Father 1: Mutation 3,Father 1: Grade 3,Mother 1: Mutation 1,Mother 1: Grade 1,Mother 1: Mutation 2,Mother 1: Grade 2,Mother 1: Mutation 3,Mother 1: Grade 3
 ID-001,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,wt,Mut-C,hom,Mut-A,wt,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,het
 ID-002,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,wt,Mut-C,hom,Mut-A,wt,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,het
 ID-003,Line-ABC,02/01/2025,ID-F1,ID-M1,End of experiment,Mut-B,wt,Mut-A,het,Mut-C,hom,Mut-A,wt,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,het

pyrat-data-single-mutation.csv

@@ -1,4 +1,4 @@
-ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1,Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
+ID,Line / Strain (Name),DOB,Father 1,Mother 1,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father 1: Mutation 1,Father 1: Grade 1,Father 1: Mutation 2,Father 1: Grade 2,Father 1: Mutation 3,Father 1: Grade 3,Mother 1: Mutation 1,Mother 1: Grade 1,Mother 1: Mutation 2,Mother 1: Grade 2,Mother 1: Mutation 3,Mother 1: Grade 3
 ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,het,,,,
 ID-002,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,wt,,,,,Mut-A,wt,,,,,Mut-A,het,,,,
 ID-003,Line-A,02/01/2026,ID-F1,ID-M1,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,het,,,,

standardised-data-2-mutations.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
 ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_hom,het_hom,hom_het
 ID-003,Line-AB,02/01/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,het_hom,hom_het
@@ -29,4 +29,4 @@ ID-027,Line-BC,09/08/2025,ID-F11,ID-M11,End of experiment,2,Mut-B_Mut-C,wt_het,w
 ID-028,Line-CD,01/12/2025,ID-F12,ID-M12,End of experiment,2,Mut-C_Mut-D,hom_hom,het_hom,hom_het
 ID-029,Line-CD,01/12/2025,ID-F12,ID-M12,End of experiment,2,Mut-C_Mut-D,hom_hom,het_hom,hom_het
 ID-030,Line-DE,06/06/2025,ID-F13,ID-M13,End of experiment,2,Mut-D_Mut-E,het_het,het_wt,wt_het
-ID-031,Line-DE,06/06/2025,ID-F13,ID-M13,End of experiment,2,Mut-D_Mut-E,het_het,het_wt,wt_het
+ID-031,Line-DE,06/06/2025,ID-F13,ID-M13,End of experiment,2,Mut-D_Mut-E,het_het,het_wt,wt_het

standardised-data-3-mutations.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
 ID-001,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het
 ID-002,Line-ABC,15/12/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het
 ID-003,Line-ABC,02/01/2025,ID-F1,ID-M1,End of experiment,3,Mut-A_Mut-B_Mut-C,het_wt_hom,wt_wt_het,het_het_het

standardised-data-single-mutation.csv

@@ -1,4 +1,4 @@
-ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father_1,genotype_mother_1
 ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,het,wt,het
 ID-002,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,wt,wt,het
 ID-003,Line-A,02/01/2026,ID-F1,ID-M1,End of experiment,1,Mut-A,het,wt,het