updated edge cases

pyrat-data-multiple-parents-1-mutation.csv

@@ -8,4 +8,11 @@ ID-006,Line-A,15/02/2026,ID-F5,ID-M5,ID-F6,ID-M6,End of experiment,Mut-A,wt,Mut-
 ID-007,Line-A,15/02/2026,ID-F5,ID-M5,ID-F6,ID-M6,End of experiment,Mut-A,het,Mut-A,het,Mut-A,het,Mut-A,wt,Mut-A,wt
 ID-008,Line-A,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-A,hom,,,Mut-A,het,Mut-A,hom
 ID-009,Line-A,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,wt,Mut-A,hom,,,Mut-A,hom,Mut-A,hom
-ID-010,Line-A,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,hom,Mut-A,hom,,,Mut-A,hom,Mut-A,hom
+ID-010,Line-A,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,hom,Mut-A,hom,,,Mut-A,hom,Mut-A,hom
+ID-011,Line-A,01/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,het,Mut-A,het,,,Mut-A,wt,Mut-A,wt
+ID-012,Line-A,20/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,wt,Mut-A,het,,,Mut-A,wt,Mut-A,wt
+ID-013,Line-A,05/05/2026,ID-F9,ID-M11,ID-F10,ID-M12,End of experiment,Mut-A,het,Mut-A,wt,Mut-A,wt,Mut-A,het,Mut-A,het
+ID-014,Line-A,05/05/2026,ID-F10,ID-M12,ID-F9,ID-M11,End of experiment,Mut-A,wt,Mut-A,wt,Mut-A,wt,Mut-A,het,Mut-A,het
+ID-015,Line-A,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,het,Mut-A,het,Mut-A,het,Mut-A,het,,
+ID-016,Line-A,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,wt,Mut-A,het,Mut-A,het,Mut-A,het,,
+ID-017,Line-A,12/06/2026,ID-F13,ID-M14,ID-F14,ID-M15,End of experiment,Mut-A,het,Mut-A,hom,Mut-A,hom,Mut-A,wt,Mut-A,wt

pyrat-data-multiple-parents-2-mutations.csv

@@ -8,4 +8,11 @@ ID-006,Line-AB,15/02/2026,ID-F5,ID-M5,ID-F6,ID-M6,End of experiment,Mut-A,hom,Mu
 ID-007,Line-AB,15/02/2026,ID-F5,ID-M5,ID-F6,ID-M6,End of experiment,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt,Mut-A,wt,Mut-B,wt,Mut-A,wt,Mut-B,wt
 ID-008,Line-AB,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-B,het,Mut-A,hom,Mut-B,wt,,,,,Mut-A,het,Mut-B,hom,Mut-A,wt,Mut-B,het
 ID-009,Line-AB,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,wt,Mut-B,hom,Mut-A,hom,Mut-B,wt,,,,,Mut-A,hom,Mut-B,hom,Mut-A,hom,Mut-B,hom
-ID-010,Line-AB,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,het,,,,,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt
+ID-010,Line-AB,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,het,,,,,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt
+ID-011,Line-AB,01/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt,,,,,Mut-A,wt,Mut-B,het,Mut-A,wt,Mut-B,het
+ID-012,Line-AB,20/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,wt,Mut-B,het,Mut-A,het,Mut-B,wt,,,,,Mut-A,wt,Mut-B,het,Mut-A,wt,Mut-B,het
+ID-013,Line-AB,05/05/2026,ID-F9,ID-M11,ID-F10,ID-M12,End of experiment,Mut-A,het,Mut-B,het,Mut-A,wt,Mut-B,het,Mut-A,wt,Mut-B,het,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt
+ID-014,Line-AB,05/05/2026,ID-F10,ID-M12,ID-F9,ID-M11,End of experiment,Mut-A,het,Mut-B,wt,Mut-A,wt,Mut-B,het,Mut-A,wt,Mut-B,het,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt
+ID-015,Line-AB,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,het,Mut-B,het,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,het,,,,
+ID-016,Line-AB,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,wt,Mut-B,het,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,wt,Mut-A,het,Mut-B,het,,,,
+ID-017,Line-AB,12/06/2026,ID-F13,ID-M14,ID-F14,ID-M15,End of experiment,Mut-A,het,Mut-B,het,Mut-A,hom,Mut-B,het,Mut-A,hom,Mut-B,het,Mut-A,wt,Mut-B,wt,Mut-A,wt,Mut-B,wt

pyrat-data-multiple-parents-3-mutations.csv

@@ -9,4 +9,11 @@ ID-007,Line-ABC,15/02/2026,ID-F5,ID-M5,ID-F6,ID-M6,End of experiment,Mut-A,het,M
 ID-008,Line-ABC,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-B,het,Mut-C,het,Mut-A,hom,Mut-B,wt,Mut-C,hom,,,,,,,Mut-A,het,Mut-B,hom,Mut-C,wt,Mut-A,wt,Mut-B,het,Mut-C,hom
 ID-009,Line-ABC,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,wt,Mut-B,hom,Mut-C,hom,Mut-A,hom,Mut-B,wt,Mut-C,hom,,,,,,,Mut-A,hom,Mut-B,het,Mut-C,hom,Mut-A,hom,Mut-B,het,Mut-C,hom
 ID-010,Line-ABC,15/03/2026,ID-F7,ID-M5,,ID-M8,End of experiment,Mut-A,het,Mut-B,wt,Mut-C,hom,Mut-A,het,Mut-B,wt,Mut-C,hom,,,,,,,Mut-A,wt,Mut-B,wt,Mut-C,hom,Mut-A,wt,Mut-B,wt,Mut-C,hom
+ID-011,Line-ABC,01/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,wt,,,,,,,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,wt,Mut-B,het,Mut-C,hom
+ID-012,Line-ABC,20/04/2026,ID-F8,ID-M9,,ID-M10,End of experiment,Mut-A,wt,Mut-B,het,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,wt,,,,,,,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,wt,Mut-B,het,Mut-C,hom
+ID-013,Line-ABC,05/05/2026,ID-F9,ID-M11,ID-F10,ID-M12,End of experiment,Mut-A,het,Mut-B,het,Mut-C,het,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,het
+ID-014,Line-ABC,05/05/2026,ID-F10,ID-M12,ID-F9,ID-M11,End of experiment,Mut-A,wt,Mut-B,wt,Mut-C,hom,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,wt,Mut-B,het,Mut-C,hom,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,het
+ID-015,Line-ABC,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,het,Mut-B,het,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,wt,,,,,,
+ID-016,Line-ABC,12/06/2026,ID-F11,ID-M13,ID-F12,,End of experiment,Mut-A,wt,Mut-B,het,Mut-C,wt,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,wt,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,wt,,,,,,
+ID-017,Line-ABC,12/06/2026,ID-F13,ID-M14,ID-F14,ID-M15,End of experiment,Mut-A,het,Mut-B,het,Mut-C,hom,Mut-A,hom,Mut-B,het,Mut-C,het,Mut-A,hom,Mut-B,het,Mut-C,het,Mut-A,wt,Mut-B,wt,Mut-C,het,Mut-A,wt,Mut-B,wt,Mut-C,het
 

standardised-data-multiple-parents-1-mutation.csv

@@ -6,9 +6,9 @@ ID-006,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,wt,wt
 ID-007,Line-A,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,1,Mut-A,het,het,wt
 ID-010,Line-A,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,1,Mut-A,hom,hom,hom
 ID-011,Line-A,01/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,1,Mut-A,het,het,wt
-ID-012,Line-A,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,1,Mut-A,hom,het,hom
+ID-012,Line-A,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,1,Mut-A,wt,het,wt
 ID-013,Line-A,05/05/2026,ID-F9,ID-F10,ID-M11,ID-M12,End of experiment,1,Mut-A,het,wt,het
-ID-014,Line-A,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,1,Mut-A,hom,wt,het
+ID-014,Line-A,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,1,Mut-A,wt,wt,het
 ID-015,Line-A,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,1,Mut-A,het,het,het
 ID-016,Line-A,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,1,Mut-A,wt,het,het
 ID-017,Line-A,12/06/2026,ID-F13,ID-F14,ID-M14,ID-M15,End of experiment,1,Mut-A,het,hom,wt

standardised-data-multiple-parents-2-mutations.csv

@@ -5,9 +5,9 @@ ID-004,Line-AB,02/01/2026,ID-F3,ID-F4,ID-M3,,End of experiment,2,Mut-A,Mut-B,het
 ID-007,Line-AB,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,2,Mut-A,Mut-B,het_wt,het_wt,wt_wt
 ID-010,Line-AB,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_wt
 ID-011,Line-AB,01/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,2,Mut-A,Mut-B,het_wt,het_wt,wt_het
-ID-012,Line-AB,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,2,Mut-A,Mut-B,hom_het,het_wt,hom_wt
+ID-012,Line-AB,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,2,Mut-A,Mut-B,wt_het,het_wt,wt_het
 ID-013,Line-AB,05/05/2026,ID-F9,ID-F10,ID-M11,ID-M12,End of experiment,2,Mut-A,Mut-B,het_het,wt_het,het_wt
-ID-014,Line-AB,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,2,Mut-A,Mut-B,hom_wt,wt_het,het_wt
+ID-014,Line-AB,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,2,Mut-A,Mut-B,het_wt,wt_het,het_wt
 ID-015,Line-AB,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,2,Mut-A,Mut-B,het_het,het_wt,het_het
 ID-016,Line-AB,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,2,Mut-A,Mut-B,wt_het,het_wt,het_het
-ID-017,Line-AB,12/06/2026,ID-F13,ID-F14,ID-M14,ID-M15,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_wt
+ID-017,Line-AB,12/06/2026,ID-F13,ID-F14,ID-M14,ID-M15,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_wt

standardised-data-multiple-parents-3-mutations.csv

@@ -6,9 +6,9 @@ ID-004,Line-ABC,02/01/2026,ID-F3,,ID-M3,ID-M4,End of experiment,3,Mut-A,Mut-B,Mu
 ID-007,Line-ABC,15/02/2026,ID-F5,ID-F6,ID-M5,ID-M6,End of experiment,3,Mut-A,Mut-B,Mut-C,het_wt_wt,het_wt_wt,wt_wt_wt
 ID-010,Line-ABC,15/03/2026,ID-F7,,ID-M5,ID-M8,End of experiment,3,Mut-A,Mut-B,Mut-C,het_wt_hom,het_wt_hom,wt_wt_hom
 ID-011,Line-ABC,01/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,3,Mut-A,Mut-B,Mut-C,het_wt_het,het_wt_wt,wt_het_hom
-ID-012,Line-ABC,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,3,Mut-A,Mut-B,Mut-C,hom_het_wt,het_wt_wt,hom_het_hom
-ID-013,Line-ABC,05/05/2026,ID-F9,ID-F10,ID-M11,ID-M12,End of experiment,3,Mut-A,Mut-B,Mut-C,het_het_wt,wt_het_hom,het_wt_het
-ID-014,Line-ABC,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,3,Mut-A,Mut-B,Mut-C,hom_wt_het,wt_het_hom,het_wt_het
+ID-012,Line-ABC,20/04/2026,ID-F8,,ID-M9,ID-M10,End of experiment,3,Mut-A,Mut-B,Mut-C,wt_het_het,het_wt_wt,wt_het_hom
+ID-013,Line-ABC,05/05/2026,ID-F9,ID-F10,ID-M11,ID-M12,End of experiment,3,Mut-A,Mut-B,Mut-C,het_het_het,wt_het_hom,het_wt_het
+ID-014,Line-ABC,05/05/2026,ID-F10,ID-F9,ID-M12,ID-M11,End of experiment,3,Mut-A,Mut-B,Mut-C,wt_wt_hom,wt_het_hom,het_wt_het
 ID-015,Line-ABC,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,3,Mut-A,Mut-B,Mut-C,het_het_het,het_wt_het,het_het_wt
-ID-016,Line-ABC,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,3,Mut-A,Mut-B,Mut-C,wt_het_hom,het_wt_het,het_het_wt
-ID-017,Line-ABC,12/06/2026,ID-F13,ID-F14,ID-M14,ID-M15,End of experiment,3,Mut-A,Mut-B,Mut-C,het_hom_wt,hom_het_het,wt_wt_het
+ID-016,Line-ABC,12/06/2026,ID-F11,ID-F12,ID-M13,,End of experiment,3,Mut-A,Mut-B,Mut-C,wt_het_wt,het_wt_het,het_het_wt
+ID-017,Line-ABC,12/06/2026,ID-F13,ID-F14,ID-M14,ID-M15,End of experiment,3,Mut-A,Mut-B,Mut-C,het_het_hom,hom_het_het,wt_wt_het