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change forbidden and add new test data files for user inpiuts

Henry Crosswell 1 month ago
parent
commit
e20e915a39

+ 3 - 3
pyrat-data-forbidden-genotypes.csv

@@ -13,6 +13,6 @@ ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,,,,Mut-A
 ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,,Mut-B,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
 ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,,,,,,,,,,,,
 ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
-ID-015,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,-/-,,,Mut-A,+/+,Mut-B,-/-,,,Mut-A,+/+,Mut-B,-/-,,
-ID-016,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,+/+,,,Mut-A,+/+,Mut-B,+/+,,,Mut-A,+/+,Mut-B,+/+,,
-ID-017,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,dp1Tyb,Mut-B,hom,,,Mut-A,dp1Tyb,Mut-B,hom,,,Mut-A,dp1Tyb,Mut-B,hom,,
+ID-015,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,dp1Tyb,Mut-B,hom,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,
+ID-016,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,het,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,
+ID-017,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,-/-,Mut-B,het,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,

+ 3 - 0
pyrat-data-wt-value.csv

@@ -0,0 +1,3 @@
+ID,Line / Strain (Name),DOB,Father 1,Mother 1,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father 1: Mutation 1,Father 1: Grade 1,Father 1: Mutation 2,Father 1: Grade 2,Father 1: Mutation 3,Father 1: Grade 3,Mother 1: Mutation 1,Mother 1: Grade 1,Mother 1: Mutation 2,Mother 1: Grade 2,Mother 1: Mutation 3,Mother 1: Grade 3
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,het,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,
+ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,-/-,Mut-B,het,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,

+ 1 - 1
standardised-data-forbidden-genotypes.csv

@@ -8,4 +8,4 @@ ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_wt,het
 ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,hom_het,wt_hom
 ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,wt_wt,wt_wt
 ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,,hom_het,wt_hom
-ID-017,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,het_hom,het_hom
+ID-015,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,het_hom,hom_het,wt_hom

+ 3 - 0
standardised-data-wt-value-minus-is-wt.csv

@@ -0,0 +1,3 @@
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_het,het_het,het_het
+ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,wt_het,het_het,het_het

+ 3 - 0
standardised-data-wt-value-plus-is-wt.csv

@@ -0,0 +1,3 @@
+ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,wt_het,het_het,het_het
+ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A_Mut-B,hom_het,het_het,het_het