adding from non standard genotype branch to prevent errors in data

standardised-data-forbidden-genotypes-minus-wt.csv

@@ -1,15 +1,15 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
-ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,hom_wt,hom_wt
-ID-004,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,het_het,het_het
-ID-005,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_hom,wt_wt
-ID-006,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-010,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_hom
-ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
-ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
-ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt
-ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
-ID-015,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID_offspring,line_name,offspring_sex,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,hom_wt,hom_wt
+ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,het_het,het_het
+ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_hom,wt_wt
+ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_hom
+ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
+ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
+ID-013,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt
+ID-014,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
+ID-015,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom

standardised-data-forbidden-genotypes-plus-wt.csv

@@ -1,15 +1,15 @@
-ID_offspring,line_name,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
-ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,wt_hom,wt_hom
-ID-004,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,het_het,het_het
-ID-005,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,wt_wt,hom_hom
-ID-006,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-010,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_wt
-ID-011,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
-ID-012,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
-ID-013,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt
-ID-014,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
-ID-015,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID_offspring,line_name,offspring_sex,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,wt_hom,wt_hom
+ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,het_het,het_het
+ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,wt_wt,hom_hom
+ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_wt
+ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
+ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
+ID-013,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt
+ID-014,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
+ID-015,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom