separate forbidden genotypes into a separate csv file

README.md

@@ -1,2 +1,3 @@
 # oscar-test-data
 
+Test data for OSCaR breeding scheme calculator.

pyrat-data-2-mutations.csv

@@ -12,17 +12,12 @@ ID-010,Line-AB,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,Mut-B,het,,,Mut
 ID-011,Line-AB,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,het,Mut-B,het,,,Mut-B,hom,,,,,Mut-A,hom,,,,
 ID-012,Line-AB,01/12/2025,ID-F7,ID-M7,End of experiment,Mut-A,het,Mut-B,het,,,Mut-B,hom,,,,,Mut-A,hom,,,,
 ID-013,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,Mut-B,het,,,Mut-B,hom,,,,,Mut-A,hom,,,,
-ID-014,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,+,Mut-B,-,,,Mut-B,+,,,,,Mut-A,+,,,,
-ID-015,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,Mut-B,hom,,,Mut-B,+,,,,,Mut-A,+,,,,
-ID-016,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,Tg,Mut-B,Tg,,,Mut-B,Tg,,,,,Mut-A,ko/ko,,,,
-ID-017,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,,,,,,,,,,,,
-ID-018,Line-AB,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,Mut-A,het,,,,,Mut-B,het,,,,
-ID-019,Line-BC,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,hom,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
-ID-020,Line-BC,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,hom,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
-ID-021,Line-BC,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-C,hom,Mut-B,het,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
-ID-022,Line-BC,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-C,wt,Mut-B,het,,,Mut-B,het,,,,,Mut-C,het,,,,
-ID-023,Line-BC,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,Mut-C,wt,,,Mut-B,het,,,,,Mut-C,het,,,,
-ID-024,Line-BC,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,,,Mut-C,het,,,,,Mut-B,het,,,,
-ID-025,Line-BC,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,,,Mut-C,het,,,,,Mut-B,het,,,,
-ID-026,Line-CD,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,,,Mut-C,het,Mut-D,hom,,,Mut-D,het,Mut-C,hom,,
-ID-027,Line-CD,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,,,Mut-C,het,Mut-D,hom,,,Mut-D,het,Mut-C,hom,,
+ID-014,Line-BC,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,hom,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
+ID-015,Line-BC,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,hom,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
+ID-016,Line-BC,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-C,hom,Mut-B,het,,,Mut-B,het,Mut-C,hom,,,Mut-B,het,Mut-C,hom,,
+ID-017,Line-BC,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-C,wt,Mut-B,het,,,Mut-B,het,,,,,Mut-C,het,,,,
+ID-018,Line-BC,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,Mut-C,wt,,,Mut-B,het,,,,,Mut-C,het,,,,
+ID-019,Line-BC,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,,,Mut-C,het,,,,,Mut-B,het,,,,
+ID-020,Line-BC,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,,,Mut-C,het,,,,,Mut-B,het,,,,
+ID-021,Line-CD,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,,,Mut-C,het,Mut-D,hom,,,Mut-D,het,Mut-C,hom,,
+ID-022,Line-CD,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,,,Mut-C,het,Mut-D,hom,,,Mut-D,het,Mut-C,hom,,

pyrat-data-3-mutations.csv

@@ -12,17 +12,12 @@ ID-010,Line-ABC,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,Mut-B,het,Mut-
 ID-011,Line-ABC,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,het,Mut-B,het,Mut-C,,Mut-B,hom,Mut-C,het,,,Mut-A,hom,,,,
 ID-012,Line-ABC,01/12/2025,ID-F7,ID-M7,End of experiment,Mut-A,het,Mut-B,het,Mut-C,,Mut-B,hom,Mut-C,het,,,Mut-A,hom,,,,
 ID-013,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,Mut-B,het,Mut-C,,Mut-B,hom,Mut-C,het,,,Mut-A,hom,,,,
-ID-014,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,+,Mut-B,-,Mut-C,-,Mut-B,+,Mut-C,-,,,Mut-A,+,,,,
-ID-015,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,Mut-B,hom,Mut-C,wt,Mut-B,+,Mut-C,-,,,Mut-A,+,,,,
-ID-016,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,Tg,Mut-B,Tg,Mut-C,ko/ko,Mut-B,Tg,,,,,Mut-A,ko/ko,,,,
-ID-017,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,,,,,,,,,,,,
-ID-018,Line-ABC,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,Mut-A,het,Mut-B,het,Mut-C,het,Mut-A,het,Mut-B,het,Mut-C,het
-ID-019,Line-BCD,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
-ID-020,Line-BCD,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
-ID-021,Line-BCD,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-C,het,Mut-B,wt,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
-ID-022,Line-BCD,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-C,wt,Mut-B,het,Mut-D,hom,Mut-B,het,Mut-D,hom,,,Mut-C,het,,,,
-ID-023,Line-BCD,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-D,het,,,Mut-C,het,,,,
-ID-024,Line-BCD,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-C,het,,,,,Mut-B,het,Mut-D,hom,,
-ID-025,Line-BCD,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-C,het,,,,,Mut-B,het,Mut-D,het,,
-ID-026,Line-CDE,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,Mut-E,het,Mut-C,het,Mut-D,hom,Mut-E,hom,Mut-D,het,Mut-C,hom,Mut-E,hom
-ID-027,Line-CDE,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,Mut-E,het,Mut-C,het,Mut-D,hom,Mut-E,hom,Mut-D,het,Mut-C,hom,Mut-E,hom
+ID-014,Line-BCD,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
+ID-015,Line-BCD,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
+ID-016,Line-BCD,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-C,het,Mut-B,wt,Mut-D,hom,Mut-B,het,Mut-C,het,Mut-D,hom,Mut-B,hom,Mut-C,het,Mut-D,hom
+ID-017,Line-BCD,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-C,wt,Mut-B,het,Mut-D,hom,Mut-B,het,Mut-D,hom,,,Mut-C,het,,,,
+ID-018,Line-BCD,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-B,het,Mut-D,het,,,Mut-C,het,,,,
+ID-019,Line-BCD,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-C,het,,,,,Mut-B,het,Mut-D,hom,,
+ID-020,Line-BCD,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,wt,Mut-C,het,Mut-D,hom,Mut-C,het,,,,,Mut-B,het,Mut-D,het,,
+ID-021,Line-CDE,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,Mut-E,het,Mut-C,het,Mut-D,hom,Mut-E,hom,Mut-D,het,Mut-C,hom,Mut-E,hom
+ID-022,Line-CDE,01/12/2025,ID-F12,ID-M13,End of experiment,Mut-C,hom,Mut-D,hom,Mut-E,het,Mut-C,het,Mut-D,hom,Mut-E,hom,Mut-D,het,Mut-C,hom,Mut-E,hom

pyrat-data-forbidden-genotypes.csv

@@ -0,0 +1,12 @@
+ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1,Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
+ID-001,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,hom,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,
+ID-002,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+,Mut-B,-,,,Mut-A,+,Mut-B,-,,,Mut-A,+,Mut-B,-,,
+ID-003,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,Tg,Mut-B,Tg,,,Mut-A,T,Mut-B,-,,,Mut-A,T,Mut-B,-,,
+ID-004,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+,Mut-B,-,,,Mut-A,het,Mut-B,hom,,,Mut-A,het,Mut-B,hom,,
+ID-005,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,hom,,,Mut-A,+,Mut-B,-,,,Mut-A,+,Mut-B,-,,
+ID-006,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/ko,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,ko/ko,,
+ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,Mut-A,ki/ki,Mut-B,het,,,Mut-A,wt,Mut-B,ki/ki,,
+ID-007,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/+,,,Mut-A,ko/-,Mut-B,het,,,Mut-A,-/ko,Mut-B,+/ko,,
+ID-008,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
+ID-009,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,,,,,,,,,,,,
+ID-010,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,,,,,,,Mut-A,het,Mut-B,het,,,Mut-A,hom,Mut-B,het,,

pyrat-data-single-mutation.csv

@@ -12,15 +12,10 @@ ID-010,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,,,,,Mut-A,het,,,
 ID-011,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,,,,,Mut-A,het,,,,,Mut-A,het,,,,
 ID-012,Line-A,01/12/2025,ID-F7,ID-M7,End of experiment,Mut-A,het,,,,,Mut-A,het,,,,,Mut-A,hom,,,,
 ID-013,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,hom,,,,,Mut-A,het,,,,,Mut-A,hom,,,,
-ID-014,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,+,,,,,Mut-A,+,,,,,Mut-A,+,,,,
-ID-015,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,,,,,Mut-A,+,,,,,Mut-A,+,,,,
-ID-016,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,Tg,,,,,Mut-A,Tg,,,,,Mut-A,ko/ko,,,,
-ID-017,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,,,,,,,,,,,,
-ID-018,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,Mut-A,het,,,,,Mut-A,het,,,,
-ID-019,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
-ID-020,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
-ID-021,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
-ID-022,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
-ID-023,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,
-ID-024,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,
-ID-025,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,
+ID-014,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
+ID-015,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
+ID-016,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
+ID-017,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,
+ID-018,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,
+ID-019,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,
+ID-020,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,