added sex_split optionto test-data

converted-surplus-per-genotype.csv

@@ -1,10 +1,10 @@
-Genotype,Required N,Total N,Total N Surplus,Percent Surplus
-het_het,380.0,380.69,0.69,0.18
-het_hom,18.0,18.82,0.82,4.34
-hom_het,49.0,50.66,1.66,3.28
-hom_hom,1.0,1.45,0.45,30.92
-het_wt,23.0,23.16,0.16,0.69
-hom_wt,20.0,20.26,0.26,1.31
-wt_het,48.0,49.22,1.22,2.47
-wt_wt,4.0,4.34,0.34,7.89
-wt_hom,7.0,7.24,0.24,3.28
+Genotype,Required N,Total N,Total N Surplus,Total M,Total M Surplus,Percent M Surplus,Total F,Total F Surplus,Percent F Surplus,Percent Surplus
+het_het,380.0,380.69,0.69,190.35,0.35,0.18,190.35,0.35,0.18,0.18
+het_hom,18.0,18.82,0.82,,,,,,,4.34
+hom_het,50.0,50.66,0.66,25.33,0.33,1.31,25.33,0.33,1.31,1.31
+hom_hom,1.0,1.45,0.45,,,,,,,30.92
+het_wt,23.0,23.16,0.16,,,,,,,0.69
+hom_wt,20.0,20.26,0.26,,,,,,,1.31
+wt_het,48.0,49.22,1.22,,,,,,,2.47
+wt_wt,4.0,4.34,0.34,,,,,,,7.89
+wt_hom,7.0,7.24,0.24,,,,,,,3.28

pyrat-data-forbidden-genotypes.csv

@@ -5,9 +5,9 @@ ID-003,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,Tg,Mut-B,Tg,,,Mu
 ID-004,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,+/+,Mut-B,-/-,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,
 ID-005,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,het,,,Mut-A,+/+,Mut-B,+/+,,,Mut-A,-/-,Mut-B,-/-,,
 ID-006,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/ko,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,ko/ko,,
-ID-007,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,Mut-A,ki/ki,Mut-B,het,,,Mut-A,wt,Mut-B,ki/ki,,
+ID-007,,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/ki,,,Mut-A,ki/ki,Mut-B,het,,,Mut-A,wt,Mut-B,ki/ki,,
 ID-008,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/+,,,Mut-A,ko/-,Mut-B,het,,,Mut-A,-/ko,Mut-B,+/ko,,
-ID-009,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
+ID-009,,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ki/+,,,Mut-A,ki/-,Mut-B,het,,,Mut-A,-/ki,Mut-B,+/ki,,
 ID-010,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,ko/+,,,Mut-A,ko/ko,Mut-B,het,,,Mut-A,wt,Mut-B,+/+,,
 ID-011,m,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,Mut-B,,,,Mut-A,het,Mut-B,het,,,Mut-A,het,Mut-B,het,,
 ID-012,f,Line-AB,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,,Mut-B,,,,Mut-A,hom,Mut-B,het,,,Mut-A,wt,Mut-B,hom,,

standardised-data-forbidden-genotypes-minus-wt.csv

@@ -4,9 +4,9 @@ ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,h
 ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,hom_wt,het_het,het_het
 ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_hom,wt_wt
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_hom
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom

standardised-data-forbidden-genotypes-plus-wt.csv

@@ -4,9 +4,9 @@ ID-002,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,w
 ID-004,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,wt_hom,het_het,het_het
 ID-005,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,wt_wt,hom_hom
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-010,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,hom_het,wt_wt
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom

standardised-data-forbidden-genotypes.csv

@@ -1,9 +1,9 @@
 ID_offspring,line_name,offspring_sex,date_of_birth,ID_father_1,ID_mother_1,sacrifice_reason,n_mutations,mutation_1,mutation_2,genotype_offspring,genotype_father,genotype_mother
 ID-001,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-006,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
-ID-007,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
+ID-007,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_hom,hom_het,wt_hom
 ID-008,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
-ID-009,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
+ID-009,Line-AB,,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_het,het_het,het_het
 ID-011,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,het_wt,het_het,het_het
 ID-012,Line-AB,f,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,hom_het,wt_hom
 ID-013,Line-AB,m,15/12/2025,ID-F1,ID-M1,End of experiment,2,Mut-A,Mut-B,,wt_wt,wt_wt