update single mutation data to add mutation names

pyrat-data-single-mutation.csv

@@ -1,26 +1,26 @@
-ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Grade 1,Grade 2,Grade 3,Father: Grade 1,Father: Grade 2,Father: Grade 3,Mother: Grade 1,Mother: Grade 2,Mother: Grade 3
-ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,het,,,wt,,,het,,
-ID-002,Line-A,13/12/2025,ID-F1,ID-M1,End of experiment,wt,,,wt,,,het,,
-ID-003,Line-A,11/12/2025,ID-F1,ID-M2,End of experiment,het,,,wt,,,het,,
-ID-004,Line-A,12/12/2025,ID-F2,ID-M3,End of experiment,wt,,,wt,,,het,,
-ID-005,Line-A,18/12/2025,ID-F3,ID-M4,End of experiment,het,,,wt,,,hom,,
-ID-006,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,het,,,wt,,,hom,,
-ID-007,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,het,,,wt,,,hom,,
-ID-008,Line-A,01/12/2025,ID-F4,ID-M5,End of experiment,het,,,het,,,het,,
-ID-009,Line-A,01/12/2025,ID-F5,ID-M5,End of experiment,hom,,,het,,,het,,
-ID-010,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,wt,,,het,,,het,,
-ID-011,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,wt,,,het,,,het,,
-ID-012,Line-A,01/12/2025,ID-F7,ID-M7,End of experiment,het,,,het,,,hom,,
-ID-013,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,hom,,,het,,,hom,,
-ID-014,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,+,,,+,,,+,,
-ID-015,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,het,,,+,,,+,,
-ID-016,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Tg,,,Tg,,,ko/ko,,
-ID-017,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,,,
-ID-018,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,het,,,het,,
-ID-019,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,het,,,wt,,,het,,
-ID-020,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,wt,,,wt,,,het,,
-ID-021,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,het,,,wt,,,het,,
-ID-022,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,wt,,,wt,,,het,,
-ID-023,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,het,,,wt,,,hom,,
-ID-024,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,het,,,wt,,,hom,,
-ID-025,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,het,,,wt,,,hom,,
+ID,Line / Strain (Name),DOB,Father,Mother,Sacrifice reason,Mutation 1,Grade 1,Mutation 2,Grade 2,Mutation 3,Grade 3,Father: Mutation 1, Father: Grade 1,Father: Mutation 2,Father: Grade 2,Father: Mutation 3,Father: Grade 3,Mother: Mutation 1,Mother: Grade 1,Mother: Mutation 2,Mother: Grade 2,Mother: Mutation 3,Mother: Grade 3
+ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,het,,,,,
+ID-002,Line-A,13/12/2025,ID-F1,ID-M1,End of experiment,Mut-A,wt,,,,,Mut-A,wt,,,,,Mut-A,het,,,,,
+ID-003,Line-A,11/12/2025,ID-F1,ID-M2,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,het,,,,,
+ID-004,Line-A,12/12/2025,ID-F2,ID-M3,End of experiment,Mut-A,wt,,,,,Mut-A,wt,,,,,Mut-A,het,,,,,
+ID-005,Line-A,18/12/2025,ID-F3,ID-M4,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,hom,,,,,
+ID-006,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,hom,,,,,
+ID-007,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,Mut-A,het,,,,,Mut-A,wt,,,,,Mut-A,hom,,,,,
+ID-008,Line-A,01/12/2025,ID-F4,ID-M5,End of experiment,Mut-A,het,,,,,Mut-A,het,,,,,Mut-A,het,,,,,
+ID-009,Line-A,01/12/2025,ID-F5,ID-M5,End of experiment,Mut-A,hom,,,,,Mut-A,het,,,,,Mut-A,het,,,,,
+ID-010,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,,,,,Mut-A,het,,,,,Mut-A,het,,,,,
+ID-011,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,Mut-A,wt,,,,,Mut-A,het,,,,,Mut-A,het,,,,,
+ID-012,Line-A,01/12/2025,ID-F7,ID-M7,End of experiment,Mut-A,het,,,,,Mut-A,het,,,,,Mut-A,hom,,,,,
+ID-013,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,hom,,,,,Mut-A,het,,,,,Mut-A,hom,,,,,
+ID-014,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,+,,,,,Mut-A,+,,,,,Mut-A,+,,,,,
+ID-015,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,het,,,,,Mut-A,+,,,,,Mut-A,+,,,,,
+ID-016,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,Mut-A,Tg,,,,,Mut-A,Tg,,,,,Mut-A,ko/ko,,,,,
+ID-017,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,,,,,,,,,,,,,
+ID-018,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,,,,,,,Mut-A,het,,,,,Mut-A,het,,,,,
+ID-019,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,,
+ID-020,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,,
+ID-021,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,het,,,,,
+ID-022,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,Mut-B,wt,,,,,Mut-B,wt,,,,,Mut-B,het,,,,,
+ID-023,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,,
+ID-024,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,,
+ID-025,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,Mut-B,het,,,,,Mut-B,wt,,,,,Mut-B,hom,,,,,

standardised-data-single-mutation.csv

@@ -1,21 +1,21 @@
-ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,genotype_offspring,genotype_father,genotype_mother
-ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,het,wt,het
-ID-002,Line-A,13/12/2025,ID-F1,ID-M1,End of experiment,1,wt,wt,het
-ID-003,Line-A,11/12/2025,ID-F1,ID-M2,End of experiment,1,het,wt,het
-ID-004,Line-A,12/12/2025,ID-F2,ID-M3,End of experiment,1,wt,wt,het
-ID-005,Line-A,18/12/2025,ID-F3,ID-M4,End of experiment,1,het,wt,hom
-ID-006,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,1,het,wt,hom
-ID-007,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,1,het,wt,hom
-ID-008,Line-A,01/12/2025,ID-F4,ID-M5,End of experiment,1,het,het,het
-ID-009,Line-A,01/12/2025,ID-F5,ID-M5,End of experiment,1,hom,het,het
-ID-010,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,1,wt,het,het
-ID-011,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,1,wt,het,het
-ID-012,Line-A,01/12/2025,ID-F7,ID-M7,End of experiment,1,het,het,hom
-ID-013,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,1,hom,het,hom
-ID-019,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,1,het,wt,het
-ID-020,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,1,wt,wt,het
-ID-021,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,1,het,wt,het
-ID-022,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,1,wt,wt,het
-ID-023,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,1,het,wt,hom
-ID-024,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,1,het,wt,hom
-ID-025,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,1,het,wt,hom
+ID_offspring,line_name,date_of_birth,ID_father,ID_mother,sacrifice_reason,n_mutations,mutations,genotype_offspring,genotype_father,genotype_mother
+ID-001,Line-A,15/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,het,wt,het
+ID-002,Line-A,13/12/2025,ID-F1,ID-M1,End of experiment,1,Mut-A,wt,wt,het
+ID-003,Line-A,11/12/2025,ID-F1,ID-M2,End of experiment,1,Mut-A,het,wt,het
+ID-004,Line-A,12/12/2025,ID-F2,ID-M3,End of experiment,1,Mut-A,wt,wt,het
+ID-005,Line-A,18/12/2025,ID-F3,ID-M4,End of experiment,1,Mut-A,het,wt,hom
+ID-006,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,1,Mut-A,het,wt,hom
+ID-007,Line-A,01/12/2025,ID-F3,ID-M4,End of experiment,1,Mut-A,het,wt,hom
+ID-008,Line-A,01/12/2025,ID-F4,ID-M5,End of experiment,1,Mut-A,het,het,het
+ID-009,Line-A,01/12/2025,ID-F5,ID-M5,End of experiment,1,Mut-A,hom,het,het
+ID-010,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,1,Mut-A,wt,het,het
+ID-011,Line-A,01/12/2025,ID-F6,ID-M6,End of experiment,1,Mut-A,wt,het,het
+ID-012,Line-A,01/12/2025,ID-F7,ID-M7,End of experiment,1,Mut-A,het,het,hom
+ID-013,Line-A,01/12/2025,ID-F8,ID-M8,End of experiment,1,Mut-A,hom,het,hom
+ID-019,Line-B,15/12/2025,ID-F9,ID-M9,End of experiment,1,Mut-B,het,wt,het
+ID-020,Line-B,13/12/2025,ID-F9,ID-M9,End of experiment,1,Mut-B,wt,wt,het
+ID-021,Line-B,11/12/2025,ID-F9,ID-M10,End of experiment,1,Mut-B,het,wt,het
+ID-022,Line-B,12/12/2025,ID-F10,ID-M11,End of experiment,1,Mut-B,wt,wt,het
+ID-023,Line-B,18/12/2025,ID-F11,ID-M12,End of experiment,1,Mut-B,het,wt,hom
+ID-024,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,1,Mut-B,het,wt,hom
+ID-025,Line-B,01/12/2025,ID-F11,ID-M12,End of experiment,1,Mut-B,het,wt,hom